PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009589459.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 288aa    MW: 32737.8 Da    PI: 8.2984
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009589459.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.71.9e-18136190256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++k+q  +Lee F+++++++ +++  LAk+lgL  rqV vWFqNrRa+ k
  XP_009589459.1 136 RKKLRLSKDQSAVLEETFKEHNTLNPKQKLALAKRLGLRPRQVEVWFQNRRARTK 190
                     788899***********************************************98 PP

2HD-ZIP_I/II128.33.3e-41136225191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rlsk+q+++LEe+F+e+++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  XP_009589459.1 136 RKKLRLSKDQSAVLEETFKEHNTLNPKQKLALAKRLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELR-AL 225
                     69*************************************************************************************9.55 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046186.9E-344114IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466894.18E-18129193IPR009057Homeodomain-like
PROSITE profilePS5007117.346132192IPR001356Homeobox domain
SMARTSM003895.9E-16134196IPR001356Homeobox domain
CDDcd000866.15E-15136193No hitNo description
Gene3DG3DSA:1.10.10.601.4E-17136190IPR009057Homeodomain-like
PfamPF000466.1E-16136190IPR001356Homeobox domain
PRINTSPR000312.8E-5163172IPR000047Helix-turn-helix motif
PROSITE patternPS000270167190IPR017970Homeobox, conserved site
PRINTSPR000312.8E-5172188IPR000047Helix-turn-helix motif
PfamPF021832.2E-11192226IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.2E-27192235IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009641Biological Processshade avoidance
GO:0009733Biological Processresponse to auxin
GO:0009735Biological Processresponse to cytokinin
GO:0009826Biological Processunidimensional cell growth
GO:0010016Biological Processshoot system morphogenesis
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010218Biological Processresponse to far red light
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MKMMVEKEDL GLSLSLSFPD NNNKNSTTNN PLHHQLNLIP SSSPFNLFHK TSWTDSFPSS  60
DRNSEICRVE TRTFLKGIDV NRLPATADAD EEAGVSSPNS TISSVSGNKR SERETNNCEE  120
HEIERASDEE DGETSRKKLR LSKDQSAVLE ETFKEHNTLN PKQKLALAKR LGLRPRQVEV  180
WFQNRRARTK LKQTEVDCEF LKRCCENLTE ENRRLQKEVQ ELRALKLSPQ FYMQMTPPTT  240
LTMCPSCERV AGPPTSSGPT STQVGPTQHR PMPFNLWANT PKSLHPRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134140SRKKLRL
2184192RRARTKLKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0107831e-76AP010783.1 Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0006F21, complete sequence.
GenBankHG9755201e-76HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009589459.10.0PREDICTED: homeobox-leucine zipper protein HAT4-like
SwissprotQ054661e-108HAT4_ARATH; Homeobox-leucine zipper protein HAT4
TrEMBLA0A0V0HV351e-163A0A0V0HV35_SOLCH; Putative homeobox-leucine zipper protein HAT4-like
STRINGPGSC0003DMT4000675401e-162(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11182485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.11e-108homeobox protein 2